Khan Academy Organic Chemistry

Part 1
Summary

Part 2
Summary

Part 1

General chemistry review
A review of hybrid orbitals, dot structures, electronegativity, and polarity

Organic structures and acid/base
bond-line structures, functional groups, formal charges, resonance structures, oxidation and reduction, acid/base chemistry

Alkanes and cycloalkanes
naming alkanes and cycloalkanes, conformations of alkanes and cycloalkanes, and free radical reactions

Stereochemistry
chirality, stereoisomers, assigning absolute configuration using the R,S system, optical activity, diastereomers, meso compounds, fischer projections

Substitution and elimination reactions
SN1, SN2, E1, E2, nucleophiles, nucleophilicity, basicity

Alkenes and alkynes
naming alkenes and alkynes, reactions of alkenes and alkynes, synthesis

Part 2

Alcohols, ethers, epoxides, sulfides
alcohols, ethers, epoxides, thiols, sulfides

Conjugation, Diels-Alder, and MO theory
conjugation, conjugated dienes, addition reactions of conjugated dienes, diels-alder reaction, MO theory, color 

Aromatic compounds
aromatic compounds, naming derivatives of benzene, electrophilic aromatic substitution reactions

Aldehydes and ketones
nomenclature and reactions of aldehydes and ketones

Carboxylic acids and derivatives
naming carboxylic acids, formation of carboxylic acid derivatives

Amines
nomenclature and reactions of amines

General chemistry review

Hybridization
It's the liger of orbitals and essential to organic chemistry! In this tutorial, Sal discusses the hybridization of orbitals.

Dot structures
In this tutorial, Jay reminds you how to draw the dot structures of simple organic molecules.

Hybrid orbitals
In this tutorial, Jay goes over sp3, sp2, and sp hybridization.

Electronegativity
What is the most important concept to understand in undergraduate organic chemistry? Of course, it's electronegativity! In this tutorial, Jay explains the concept of electronegativity and shows how it applies to polarity, intermolecular forces, and physical properties.

Organic structures and acid/base

Bond-line structures
Call them Bonds. Covalent Bonds. Smart chemists need time to stir (and shake) their solutions. In this tutorial, Jay explains how chemists use bond-line structures as a form of organic shorthand to skip time-consuming carbon and hydrogen atoms labeling. Watch this tutorial so you too can be in the Dr. Know.

Functional groups
In this tutorial, Jay puts the "fun" back into recognizing functional groups.

Formal charge and resonance
Positive and negative charges are everywhere in orgo! In this tutorial, Jay shows you how to assign formal charges to molecules and how to draw resonance structures.

Oxidation and reduction
LEO the Lion goes GERRRR!!!! If that is all that you remember about redox from general chemistry, then this tutorial is for you! Jay shows you how to assign oxidation states in organic molecules.

Acid/base
Do you remember the basics of acid/base chemistry? In this tutorial, Jay reminds you of a few definitions, shows you how the stability of the conjugate base affects the acidity of the molecule, and demonstrates the importance of pKa values.

Alkanes and cycloalkanes

Naming alkanes
In this tutorial, Sal shows how to name alkanes.

Conformations
In this tutorial, Sal draws Newman projections and also explains chair and boat conformations for cyclohexane.

Naming alkanes, cycloalkanes, and bicyclic compounds
Do you speak the language of organic chemistry? In this tutorial, Jay shows you how to be fluent in naming alkanes, cycloalkanes, and bicyclic compounds.

Conformations of alkanes and cycloalkanes
In this tutorial, Jay shows the different conformations of straight chain alkanes and cyclohexane.

Free radical reaction
In this tutorial, Sal introduces free radical reactions by showing the reaction of methane with chlorine.

Stereochemistry

Chirality and the R,S system
Are you right handed or sinister-handed? Have you ever thought that you might not be as attractive as you look in the mirror? Welcome to the world of chirality. In this tutorial, Sal explores molecules that have the same composition and bonding, but are fundamentally different because they are mirror images of each other (kind of like Tomax and Xamot--the Crimson Guard Commanders from GI Joe).

Chirality and absolute configuration
Mirror, mirror on the wall . . . who is the fairest stereoisomer of all? In this tutorial, Jay explains chirality and how to determine the absolute configuration at a chirality center.

Optical activity
In this tutorial, Jay explains the concept of optical activity and demonstrates how to calculate specific rotation and enantiomeric excess.

Diastereomers and meso compounds
In this tutorial, Sal and Jay define stereoisomers, diastereomers, and meso compounds.

Fischer projections
In this tutorial, Jay shows how to draw a fischer projection and how to assign an absolute configuration to a chirality center in a fischer projection.

Substitution and elimination reactions

SN1 vs SN2
In this tutorial, Sal analyzes the differences between SN1 and SN2 reactions.

Nucleophilicity and basicity
In this tutorial, Sal discusses the difference between nucleophilicity and basicity.

Elimination reactions
In this tutorial, Sal explains the difference between an E1 and an E2 elimination reaction.

SN1/SN2/E1/E2
In this tutorial, Sal compares the differences between E2, E1, SN2, and SN1 reactions.

SN1 and SN2
In this tutorial, Jay covers the definitions of nucleophile/electrophile, The Schwartz Rules (may the Schwartz be with you!), and the differences between SN1 and SN2 reactions.

E1 and E2 reactions
In this tutorial, Jay covers the E1 elimination mechanism, carbocation rearrangements, and the details of the E2 elimination reaction.

SN1/SN2/E1/E2
In this tutorial, Jay discusses the strength of a nucleophile and the differences between SN1, SN2, E1, and E2 reactions.

Alkenes and alkynes

Naming alkenes
In this tutorial, Sal names alkenes and discusses the E-Z system.

Alkene reactions
In this tutorial, Sal introduces reaction mechanisms and demonstrates a few reactions of alkenes.

Alkene nomenclature
In this tutorial, Jay names alkenes, discusses the stability of alkenes, and introduces the E/Z system.

Alkene reactions
In this tutorial, Jay explains the addition reactions of alkenes.

Naming and preparing alkynes
In this tutorial, Jay covers the nomenclature and preparation of alkynes, the acidity of terminal alkynes, and the alkylation of alkynes.

Alkyne reactions
In this tutorial, Jay shows the reactions of alkynes.

Synthesis using alkynes
In this tutorial, Jay demonstrates how to use Dr. Schwartz's organic flowsheet to solve synthesis problems involving alkynes. Always remember, pain is temporary, orgo is forever!

Alcohols, ethers, epoxides, sulfides

Content

Conjugation, Diels-Alder, and MO theory

Content

Aromatic compounds

Content

Aldehydes and ketones

Content

Carboxylic acids and derivatives

Content

Amines

Content

Hybridization

sp3 Hybridized Orbitals and Sigma Bonds 
sp3 Hybridized Orbitals and Sigma Bonds

Pi bonds and sp2 Hybridized Orbitals
Pi bonds and sp2 Hybridized Orbitals

Dot structures

dot structures I: single bonds
Summary

dot structures II: multiple bonds
Summary

Hybrid orbitals

sp3 hybrid orbitals 
Summary

tetrahedral bond angle proof 
Summary

sp2 hybrid orbitals
Summary

sp hybrid orbitals 
Summary

more hybridization
Summary

Electronegativity

electronegativity
Summary

electronegativity and intermolecular forces 
Summary

sp3 Hybridized Orbitals and Sigma Bonds 

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Pi bonds and sp2 Hybridized Orbitals

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dot structures I: single bonds

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dot structures II: multiple bonds

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sp3 hybrid orbitals 

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tetrahedral bond angle proof 

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sp2 hybrid orbitals

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sp hybrid orbitals 

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more hybridization

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electronegativity

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electronegativity and intermolecular forces 

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Bond-line structures

bond-line structures
Correction: On the last example, I said double bond and then corrected myself by saying triple bond.

3-D bond-line structures
Summary

structural (constitutional) isomers
Summary

Functional groups

functional groups I
Summary

functional groups II
Summary

Formal charge and resonance

formal charge I
Summary

formal charge II
Summary

resonance structures I
Summary

resonance structures II
Summary

resonance structures III
Summary

Oxidation and reduction

oxidation states I
Summary

oxidation states II
Summary

Acid/base

Acid/Base Definitions
Bronsted-Lowry and Lewis Definitions

Ka and pKa Derivation
A review of Keq, Ka, and pKa

Stabilization of Conjugate Base I
electronegativity

Stabilization of Conjugate Base II
resonance structures

Stabilization of Conjugate Base III
Inductive effects on acidity

Stabilization of Conjugate Base IV
The effect of hybrid orbitals on acidity

bond-line structures

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3-D bond-line structures

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structural (constitutional) isomers

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functional groups I

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functional groups II

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formal charge I

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formal charge II

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resonance structures I

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resonance structures II

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resonance structures III

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oxidation states I

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oxidation states II

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Acid/Base Definitions

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Ka and pKa Derivation

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Stabilization of Conjugate Base I

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Stabilization of Conjugate Base II

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Stabilization of Conjugate Base III

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Stabilization of Conjugate Base IV

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Naming alkanes

Representing Structures of Organic Molecules
Summary

Naming Simple Alkanes
Summary

Naming Alkanes with Alkyl Groups
Summary

Correction - 2-Propylheptane should never be the name!
Summary

Common and Systematic Naming-Iso, Sec and Tert Prefixes
Summary

Organic Chemistry Naming Examples 1
Summary

Organic Chemistry Naming Examples 2
Summary

Organic Chemistry Naming Examples 3
Summary

Organic Chemistry Naming Examples 4
Summary

Organic Chemistry Naming Examples 5
Summary

Conformations

Newman Projections
Summary

Newman Projections 2
Summary

Chair and Boat Shapes for Cyclohexane
Summary

Double Newman Diagram for Methcyclohexane
Summary

Naming alkanes, cycloalkanes, and bicyclic compounds

alkane and cycloalkane nomenclature I
Summary

alkane and cycloalkane nomenclature II
Summary

alkane and cycloalkane nomenclature III 
Summary

bicyclic compounds
Summary

naming cubane
Summary

Conformations of alkanes and cycloalkanes

conformations of ethane and propane
Summary

conformations of butane
Summary

conformations of cyclohexane I: chair and boat
Summary

conformations of cyclohexane II: monosubstituted
Summary

conformations of cyclohexane III: disubstituted 
Summary

conformations of cyclohexane IV: trisubstituted 
Summary

Free radical reaction

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Representing Structures of Organic Molecules

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Naming Simple Alkanes

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Naming Alkanes with Alkyl Groups

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Correction - 2-Propylheptane should never be the name!

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Common and Systematic Naming-Iso, Sec and Tert Prefixes

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Organic Chemistry Naming Examples 1

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Organic Chemistry Naming Examples 2

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Organic Chemistry Naming Examples 3

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Organic Chemistry Naming Examples 4

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Organic Chemistry Naming Examples 5

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Newman Projections

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Newman Projections 2

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Chair and Boat Shapes for Cyclohexane

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Double Newman Diagram for Methcyclohexane

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alkane and cycloalkane nomenclature I

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alkane and cycloalkane nomenclature II

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alkane and cycloalkane nomenclature III 

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bicyclic compounds

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naming cubane

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conformations of ethane and propane

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conformations of butane

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conformations of cyclohexane I: chair and boat

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conformations of cyclohexane II: monosubstituted

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conformations of cyclohexane III: disubstituted 

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conformations of cyclohexane IV: trisubstituted 

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Chirality and the R,S system

Introduction to Chirality
Summary

Chiral Examples 1
Summary

Chiral Examples 2
Summary

Cahn-Ingold-Prelog System for Naming Enantiomers
Summary

R,S (Cahn-Ingold-Prelog) Naming System Example 2
Summary

Chirality and absolute configuration

chirality centers and stereoisomers
Summary

R,S system for determining absolute configuration
Summary

R,S system for cyclic compounds
Summary

Optical activity

optical activity I: theory
Summary

optical activity II: calculations
Summary

Diastereomers and meso compounds

Stereoisomers, Enantiomers, Diastereomers, Constitutional Isomers and Meso Compounds
Summary

diastereomers
Summary

meso compounds
Summary

Fischer projections

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SN1 vs SN2

Naming Alkyl Halides
Summary

Sn2 Reactions
Summary

Sn1 Reactions
Summary

Steric hindrance
Summary

Sn2 Stereochemistry
Summary

Solvent Effects on Sn1 and Sn2 Reactions
Summary

Nucleophilicity and basicity

Nucleophilicity (Nucleophile Strength)
Summary

Nucleophilicity vs. Basicity
Summary

Elimination reactions

E2 Reactions
Summary

E1 Reactions
Summary

Zaitsev's Rule
Summary

SN1/SN2/E1/E2

Comparing E2 E1 Sn2 Sn1 Reactions
Summary

E2 E1 Sn2 Sn1 Reactions Example 2
Summary

E2 E1 Sn2 Sn1 Reactions Example 3
Summary

SN1 and SN2

nucleophile/electrophile and The Schwartz Rules
Summary

alkyl halide nomenclature
Summary

SN1 reaction: mechanism
Summary

SN1 reaction: stereochemistry
Summary

SN2 mechanism and stereochemistry
Summary

SN1 vs SN2: solvent effects
Summary

SN1 vs SN2: summary
Summary

E1 and E2 reactions

E1 Elimination: mechanism
Summary

E1 Elimination: regioselectivity and stereoselectivity
Summary

carbocations and rearrangements
Summary

E1 Elimination: carbocation rearrangements
Summary

E2 Elimination: mechanism
Summary

E2 Elimination: regioselectivity
Summary

E2 Elimination: stereoselectivity
Summary

E2 Elimination: stereospecificity
Summary

E2 Elimination: substituted cyclohexanes
Summary

SN1/SN2/E1/E2

nucleophilicity and basicity
Summary

SN1 SN2 E1 E2 reactions: primary and tertiary alkyl halides
Summary

SN1 SN2 E1 E2 reactions: secondary alkyl halides
Summary

Naming alkenes

Naming Alkenes Examples
Summary

Cis-Trans and E-Z Naming Scheme for Alkenes
Summary

Entgegen-Zusammen Naming Scheme for Alkenes Examples
Summary

Alkene reactions

Introduction to Reaction Mechanisms
Summary

Markovnikov's Rule and Carbocations
Summary

Addition of Water (Acid-Catalyzed) Mechanism
Summary

Polymerization of Alkenes with Acid
Summary

Alkene nomenclature

Content

Alkene intro and stability
Summary

Alkene nomenclature
Summary

cis/trans and the E/Z system
Summary

Alkene reactions

hydrogenation
Summary

hydrohalogenation
Summary

hydration
Summary

halogenation
Summary

halohydrin formation
Summary

hydroboration-oxidation
Summary

epoxide formation and anti dihydroxylation
Summary

syn dihydroxylation
Summary

Ozonolysis
Alkene clevage using ozone

Naming and preparing alkynes

alkyne nomenclature
Summary

alkyne acidity and alkylation
Summary

preparation of alkynes
Summary

Alkyne reactions

reduction of alkynes
Summary

hydrohalogenation of alkynes
Summary

hydration of alkynes
Summary

hydroboration-oxidation of alkynes
Summary

halogenation and ozonolysis of alkynes
Summary

Synthesis using alkynes

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Introduction to Chirality

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Chiral Examples 1

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Chiral Examples 2

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Cahn-Ingold-Prelog System for Naming Enantiomers

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R,S (Cahn-Ingold-Prelog) Naming System Example 2

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chirality centers and stereoisomers

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R,S system for determining absolute configuration

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R,S system for cyclic compounds

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optical activity I: theory

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optical activity II: calculations

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Stereoisomers, Enantiomers, Diastereomers, Constitutional Isomers and Meso Compounds

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diastereomers

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meso compounds

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Naming Alkyl Halides

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Sn2 Reactions

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Sn1 Reactions

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Steric hindrance

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Sn2 Stereochemistry

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Solvent Effects on Sn1 and Sn2 Reactions

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Nucleophilicity (Nucleophile Strength)

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Nucleophilicity vs. Basicity

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E2 Reactions

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E1 Reactions

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Zaitsev's Rule

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Comparing E2 E1 Sn2 Sn1 Reactions

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E2 E1 Sn2 Sn1 Reactions Example 2

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E2 E1 Sn2 Sn1 Reactions Example 3

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nucleophile/electrophile and The Schwartz Rules

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alkyl halide nomenclature

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SN1 reaction: mechanism

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SN1 reaction: stereochemistry

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SN2 mechanism and stereochemistry

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SN1 vs SN2: solvent effects

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SN1 vs SN2: summary

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E1 Elimination: mechanism

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E1 Elimination: regioselectivity and stereoselectivity

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carbocations and rearrangements

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E1 Elimination: carbocation rearrangements

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E2 Elimination: mechanism

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E2 Elimination: regioselectivity

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E2 Elimination: stereoselectivity

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E2 Elimination: stereospecificity

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E2 Elimination: substituted cyclohexanes

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nucleophilicity and basicity

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Correction: I forgot to draw a negative charge next to the first iodide anion.

SN1 SN2 E1 E2 reactions: primary and tertiary alkyl halides

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SN1 SN2 E1 E2 reactions: secondary alkyl halides

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Naming Alkenes Examples

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Cis-Trans and E-Z Naming Scheme for Alkenes

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Entgegen-Zusammen Naming Scheme for Alkenes Examples

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Introduction to Reaction Mechanisms

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Markovnikov's Rule and Carbocations

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Addition of Water (Acid-Catalyzed) Mechanism

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Polymerization of Alkenes with Acid

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Alkene intro and stability

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Alkene nomenclature

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cis/trans and the E/Z system

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hydrogenation

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hydrohalogenation

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hydration

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halogenation

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halohydrin formation

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hydroboration-oxidation

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epoxide formation and anti dihydroxylation

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syn dihydroxylation

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Ozonolysis

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alkyne nomenclature

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alkyne acidity and alkylation

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preparation of alkynes

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Note that if a terminal alkyne is produced, the strong base will deprotonate the alkyne to form an alkynide anion. A proton source (like H2O) must be added to regenerate the terminal alkyne.

reduction of alkynes

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hydrohalogenation of alkynes

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hydration of alkynes

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hydroboration-oxidation of alkynes

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halogenation and ozonolysis of alkynes

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